Best way to use CM router

Quick help if anybody has time....just bought the Carl Martin router and was planning to run an electric and acoustic through pedalboard into separate amps (the way it is suggested)....my steady gig does not require this much gear/set up so I was hoping I could go a different way....how could I make this work.....Bose L1 system as my amplification for both electric and acoustic guitar...Acoustic guitar as instrument 1 to router and amp 1 from router to channel 1 of Bose...Electric guitar as instrument 2 to router amp 2 through Line 6 to channel 2 of Bose....my questions are a) will this work? b) am I running the cords correctly and c) if so, where do I run in and out on the router to?

On Second thought, could I simply not use the input and output on the router and go:

acoustic>instrument 1 on router>amp 1 on router>Channel 1 on Bose

electric>Line 6>Instrument 2 on router> amp 2 on router>Channel 2 on Bose